Tatara, E., I. Birol, F. Teymour, and A. Cinar: Measuring Complexity in Reactor Networks with Cubic Autocatalytic Reactions, Industrial and Engineering Chemistry Research, 44, 2781-2791, 2005.

Tatara, E., I. Birol, F. Teymour, and A. Cinar: Agent-based Control of Autocatalytic Replicators in Networks of Reactors Computers and Chemical Engineering, 29 (4) 807-815, 2005.

Tokatli, F. (Kosebalaban), A. Cinar, and J. E. Schlesser: HACCP with Multivariate Process Monitoring and Fault Diagnosis Techniques: Application to a Food Pasteurization Process, Food Control, 16, 411-422, 2005.

Tatara, E., I. Birol, F. Teymour, and A. Cinar: Static and Dynamic Behavior of Autocatalytic Replicators in Reactor Networks, Industrial and Engineering Chemistry Research, 43 (14) 3972-3993, 2004.

Tokatli, F. (Kosebalaban) and A. Cinar: Fault Detection and Diagnosis in a Food Pasteurization Process with Hidden Markov Models, Canadian J Chemical Engineering, 82 (6), 1252-1262, 2004.

Tatara, E., I. Birol, F. Teymour, and A. Cinar: Static and Dynamic Behavior of Autocatalytic Replicators in Reactor Networks, Industrial and Engineering Chemistry Research, accepted for publication, 2004.

Undey, C., E. Tatara, F. and A. Cinar: Intelligent real-time performance monitoring and quality prediction for batch/fed-batch cultivations, J. of Biotechnology, 108 (1), 61-77, 2004.  

Schaefer, J. and A. Cinar: Multivariable MPC system performance assessment, monitoring, and diagnosis, J. of Process Control, 14 (2), 113-129, 2004.

Undey, C., S. Ertunc, E. Tatara, F. Teymour, and A. Cinar: Batch Process Monitoring and its Application of Polymerization Systems, Macromolecular Symposia, 206(1), 121-134, 2004.

Erzen, C., G. Birol, and A. Cinar: Development and Implementation of an Educational Simulator: GLUCOSIM, Chemical Engineering Education, 37 (4), 300-305, 2003

Undey, C., S. Ertunc, and A. Cinar: Online Batch/Fed-batch Process Performance Monitoring, Quality Prediction, and Variable-Contribution Analysis for Diagnosis, Industrial and Engineering Chemistry Research, 42 (20), 4645-4658, 2003.

Chaivorapoj, W., I. Birol, A. Cinar, and F. Teymour: Feedback Control of a Continuous-Flow Stirred Tank reactor with Competing Autocatalators, Industrial and Engineering Chemistry Research, 42 (16), 3765-3785, 2003.

Undey, C., E. Tatara, and A. Cinar: Real-time Batch Process Supervision by Integrated Knowledge-Based Systems and Multivariate Statistical Methods, Engineering Applications of Artificial Intelligence, 16, 555-566, 2003.

Undey, C. and A. Cinar: Statistical Monitoring of Multistage, Multiphase Batch Processes,  IEEE Control Systems Magazine, 22(5), 40-52, 2002. 

Birol, G.  C. Undey and A. Cinar: A Modular Simulation Package for Fed-batch Fermentation: Penicillin Production,  Computers and Chemical Engineering, 26(11), 1553-1565, 2002.

Tatara, E. and A. Cinar: Interpreting ECG Data by Integrating Statistical and Artificial Intelligence Tools, IEEE Engineering in Medicine and Biology, 21(1), 36-41, 2002.

Birol, G.  C. Undey, S. J. Parulekar and A. Cinar: A Morphologically Structured Model for Penicillin Production,  Biotechnology and Bioengineering, 77(5), 538-552, 2002. 

Tatara, E. and A. Cinar: An Intelligent System for Multivariate Statistical Process Monitoring and Diagnosis,  ISA Trans., 41, 255-270, 2002.

Birol, I., G. Birol, C. Undey and A. Cinar, A Web-Based Simulator for Penicillin Fermentation, International Journal of Engineering Simulation (electronic journal), 2(1), 24-30, 2001.

Birol, G., I. Birol and A. Cinar, Student Performance Enhancement by Cross-Course Project Assignments: A Case Study in Bioengineering and Process Modeling, Chemical Engineering Education, 35 (2), 128-133, 2001.

Kosebalaban, F. and A. Cinar: Integration of Multivariate SPM and FDD by Parity Space Technique for a Food Pasteurization Process, Computers and Chemical Engineering, 25, 473-491, 2001.

DeCicco, J. and A. Cinar: Empirical Modeling of Systems with Output Multiplicities by Multivariate Additive NARX Models, Industrial and Engineering Chemistry Research, 39 (6) 1747-1755, 2000.

Norvilas, A., A. Negiz, J. DeCicco and A. Cinar: Intelligent Monitoring by Interfacing Knowledge-Based Systems and Multivariate Statistical Monitoring, J. of Process Control, 10, 341-350, 2000.

Negiz A., P. Ramanauskas, A. Cinar, J. Schlesser, and D. Armstrong: Modeling, Monitoring and Control Strategies for High Temperature Short Time Pasteurization Systems: Part I - Empirical Model Development, Food Control, 9 (1) 1-15, 1998.

Negiz A., P. Ramanauskas, A. Cinar, J. Schlesser, and D. Armstrong: Modeling, Monitoring and Control Strategies for High Temperature Short Time Pasteurization Systems: Part II -Lethality based control, Food Control,  9 (1) 17-28, 1998.

Negiz A., P. Ramanauskas, A. Cinar, J. Schlesser, and D. Armstrong: Modeling, Monitoring and Control Strategies for High Temperature Short Time Pasteurization Systems: Part III - Statistical monitoring of product lethality and process sensor reliability, Food Control,  9 (1) 29-47, 1998.

Negiz, A. and A. Cinar: Monitoring of multivariable Dynamic Processes and Sensor Auditing, J. of Process Control, 8 (5-6), 375-380, 1998.

Schlesser, J. E., G. Lynn, D. J. Armstrong, A. Cinar, P. Ramanauskas, and A. Negiz: Acquisition, Storage and Review of Safety Data from a Commercial System for High Temperature Short Time Pasteurization, J. Dairy Science, 81, 25-30, 1998.

Negiz A. and A. Cinar: Statistical Monitoring of Multivariable Dynamic Processes with State Space Models, AIChE J., 43 (8), 2002-2020, 1997. 

Negiz A. and A. Cinar: PLS as a Technique in Identifying Vector Autoregressive Moving Average Models in State Space, Chemometrics and Intelligent Laboratory Systems, 38, 209-221, 1997.

Kendra S. J. and A. Cinar: Controller Performance Assessment by Frequency Domain Techniques, J. of Process Control, 7 (3) 181-194, 1997.

Raich A. and A. Cinar: Diagnosis of Process Disturbances by Statistical Distance and Angle Measures, Compu. Chem. Engng, 21 (6) 661-673, 1997.

Negiz A., A. Cinar, J. E. Schlesser, P. Ramanauskas, D. J. Armstrong, and W. Stroup: Automated Control of High Temperature Short Time Pasteurization and Dairy Processing, Food Control, 7 (6), 309-315, 1996.

Wu X. and A. Cinar: An Adaptive Robust M-Estimator for Nonparametric Nonlinear System Identification, J. Process Control, 6 (4) 233-239, 1996.

Raich A. and A. Cinar: Statistical Process Monitoring and Disturbance Diagnosis in Multivariable Continuous Processes, AIChE J., 42 (4), 995-1009, 1996.

Wu X., J. DeCicco, and A. Cinar: Empirical Dynamic Models for Linear And Nonlinear Dynamic Processes, Compu. Chem. Engng, accepted for publication, 1995.

Negiz A, E. S. Lagergren, and A. Cinar: Mathematical Models for Concurrent Spray Drying, Ind. Eng. Chem. Res. 34, 3289-3302, 1995.

Cinar A.: Nonlinear time series models for multivariable dynamic processes, Chemometrics and Intelligent Laboratory Systems, 30, 147-158, 1995.

Raich A. and A. Cinar: Multivariate Statistical Methods for Monitoring Continuous Processes: Assessment of Discrimination Power of Disturbance Models and Diagnosis of Multiple Disturbances, Chemometrics and Intelligent Laboratory Systems, 30, 37-48, 1995.

Kendra S. J., M. R. Basila and A. Cinar: Intelligent Process Control with Supervisory Knowledge-based Systems, IEEE Control Systems, 14, 37-47, 1994.

Ozgulsen F. and A. Cinar: Forced Periodic Operation of Tubular Reactors, Chem. Eng. Sci., 49 (20)  3409-3419, 1994.

Ozgulsen F., S. Kendra and A. Cinar: Nonlinear Predictive Control of Periodically Forced Chemical Reactors, AIChE J., 39, 589-598, 1993.

Ozgulsen F., K. Rigopoulos and A. Cinar: A Comparative Study of Tools for Assessing the Effects of Forced Periodic Operation of Catalytic Reactors, Chem. Engng Commun., 112, 85-104, 1992.

Ozgulsen F., R. Adomaitis and A. Cinar: A Numerical Method for Determining  Optimal Parameter Values in Forced Periodic Operation, Chem. Eng. Sci., 47, 605-613, 1992.

Wu X., S. Kendra and A. Cinar: Reliable Process Control with 4-Parameter Controllers, Process Control and Quality, 4, 59-75, 1992.

Kendra S. and A. Cinar: Dynamic Behavior of Periodic Feedback Control Systems, Chem. Engng Commun., 110, 31-51, 1991.

Adomaitis R.A. and A. Cinar: Numerical Singularity Analysis, Chem. Eng. Sci., 46(4), 1055-1062, 1991.

Chylla R. W. and A. Cinar: Design of Resilient Controllable Chemical Processes: An Autothermal Reactor Case Study, Ind. Eng. Chem. Res., 29, 1218-1226, 1990.

Basila M. R., A. Cinar and G. Stefanek: MOBECS: Model-object Based Expert Control Systems, Comput. Chem. Engng, 14, 551-560, 1990.

Chylla R. W. and A. Cinar: Synthesis of Model-Based Controllers for an Autothermal Reactor, Can. J Chem. Eng., 68, 666-679, 1990.

X. Shu, K. Rigopoulos and A. Cinar: Vibrational Control of an Exothermic CSTR: Productivity Improvement by Multiple Input Oscillations, IEEE Trans. Autom. Cntrl., AC-34 (2), 193-196, 1989.

Windes L. C., A. Cinar and W. H. Ray: Dynamic Estimation of Temperature and Concentration Profiles in a Packed Bed Reactor, Chem. Eng. Sci., 44 (10), 2087-2106, 1989.

Martini R. A., C. E. Sullivan and A. Cinar: An Undergraduate Experiment in Alarm System Design, Chem. Eng. Educ., Winter 1988, 22-25, 1988. 

Rigopoulos K., X. Shu and A. Cinar: Vibrational Control of an Exother­mic CSTR: Stabilization by Multiple Input Oscillations, AIChE J., 34 (12), 2041-2051, 1988.

Adomaitis R.A. and A. Cinar: The Bifurcation Behavior of an Autothermal Packed-bed Tubular Reactor, Chem. Eng. Sci., 43 (4), 887-898, 1988.

Cinar A., K. Rigopoulos, X. Shu and S.M. Meerkov: Vibrational Control of Chemical Reactors: Stability and Conversion Improvement in an Exothermic CSTR, Chem. Eng. Commun., 59, 299-308, 1987.

Martini R.A., R. W. Chylla and A. Cinar:  Fault‑Tolerant Computer Con­trol of a Time Delay System: Sensor Failure Tolerance by Controller Reconfigur­a­tion, Compu. Chem. Engng, 11 (5), 481-488, 1987. 

Cinar A., J. Deng, S. M. Meerkov and X. Shu: Vibrational Control of an Exothermic Reaction in a CSTR: Theory, Simulations, Experiments, AIChE J., 33 (3), 353-365, 1987.

Chylla R. W., R. A. Adomaitis and A Cinar: Stability of Tubular and Autothermal Packed‑Bed Reactors Using Phase Plane Analysis, Ind. Eng. Chem. Res., 26, 1356-1362, 1987. 

Cinar A., J. Deng, S.M. Meerkov and X. Shu: Vibrational Stabili­zation of a Chemical Reactor: An Experimental Study, IEEE Trans. Autom. Cntrl., AC-32 (4), 348-352, 1987. 

Cinar A.: Controller Design for a Tubular Catalytic Reactor, Can J. of Chem. Eng., 62, 746 - 754, 1984.

Geyran K., A. Palazoglu and A. Cinar: Level Measurement, Kimya Muhendisligi (Chemical Engineering), No. 104, 8 -15, 1983 (in Turkish).

Erisken S. and A. Cinar: Estimation of Controller Settings in Feedback Controllers, Isi Bilimi ve Teknigi (Journal of Thermal Sciences and Technology), 5 (1), 32 - 35, 1982 (in Turkish).

Cecen A., A. Palazoglu and A. Cinar: Pressure Measurement, Kimya Muhendisligi (Chemical Engineering), No. 102, 27 - 32, 1982 (in Turkish).

Erisken S., A. Haddeler and A. Cinar: Linear and Nonlinear Control of a Shell and Tube Heat Exchanger", Bogazici University Journal, 8-9, 27 - 36, 1980.

Cinar A.: Suboptimal Feedback Control of an Absorption Column, Isi Bilimi ve Teknigi (Journal of Thermal Sciences and Technology), 2 (2), 31 - 34, 1979 (in Turkish).

Cinar A.: An Application of Direct Digital Control:  Control of an Absorp­tion Column", Elektrik Muhendisligi (Electrical Engineering), No. 261‑262, 329 - 332, 1978. (in Turkish). 

Cinar A.: Improvements on a New Variable Selection Scheme for Feedback Control, Bogazici University Journal, 6, 1 - 13, 1978.

Cinar A.: Process Control ‑ Control Methods, Applications, Kimya Muhendisligi, (Chemical Engineering), No. 89, 35 - 44, 1978 (in Turkish).